CHAMP Human Microbiome Profiler is now available in the CosmosID-HUBLearn More
 
 

Literature

At CosmosID, we are passionate about science and publishing the most up-to-date research in the microbiome space. Our literature library below features recent findings from our clients using our CosmosID-HUB pipeline.

Explore the range of topics our clients work in, from studies on the oral microbiota of dogs to waste water microbiota, human disease, and much more.

Interested in a specific topic and looking for literature? Please reach out to us at info@cosmosid.com.

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Functional Muffins Exert Bifidogenic Effects along with Highly Product-Specific Effects on the Human Gut Microbiota Ex Vivo
September 2024
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Metabolite-based inter-kingdom communication controls intestinal tissue recovery following chemotherapeutic injury
September 2024
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Dysregulated NOX1-NOS2 activity as hallmark of ileitis in mice
September 2024
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Dietary fiber promotes antigen presentation on intestinal epithelial cells and development of small intestinal CD4+CD8αα+ intraepithelial T cells
September 2024
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Effect of Topical Microencapsulated Benzoyl Peroxide on the Skin Microbiome in Rosacea: A Randomized, Double-Blind, Crossover, Vehicle-Controlled Clinical Trial
August 2024
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Protection against fibrosis by a bacterial consortium in metabolic dysfunction-associated steatohepatitis and the role of amino acid metabolism
August 2024
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Impact of obesity on the perinatal vaginal environment and bacterial microbiome: effects on birth outcomes
August 2024
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Gut phageome in Mexican Americans: a population at high risk for metabolic dysfunction-associated steatotic liver disease and diabetes
August 2024
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Gulf War Illness Is Associated with Host Gut Microbiome Dysbiosis and Is Linked to Altered Species Abundance in Veterans from the BBRAIN Cohort
August 2024
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Draft genome sequence data of Lactiplantibacillus plantarum 33C isolated from Lithuanian fermented food
August 2024
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Double-blind randomized placebo-controlled supplementation of a standardized Terminalia chebula fruit extract alters the gut microbiome, phageome, and increases short chain fatty acids in High-BMI, borderline diabetic females
August 2024
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The Roles of a Multidrug-Resistant Klebsiella pneumoniae High-Risk Clone and Its Resistance Plasmids on the Gastrointestinal Colonization and Host-Defense Effectors in the Gut
July 2024
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A synbiotic of Anaerostipes caccae and lactulose prevents and treats food allergy in mice
July 2024
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Microbial diversity, genomics, and phage-host interactions of cyanobacterial harmful algal blooms
July 2024
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Environmentally Relevant Antibiotic Concentrations Exert Stronger Selection Pressure on River Biofilm Resistomes than AMR-Reservoir Effluents
June 2024
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Revealing the diversity of Jojoba-associated fungi using amplicon metagenome approach and assessing the in vitro biocontrol activity of its cultivable community
May 2024
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Co-Removal of Perfluorooctanoic Acid and Nitrate from Water by Coupling Pd Catalysis with Enzymatic Biotransformation
May 2024
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Whole-Genome Shotgun Metagenomic Sequencing Reveals Shifts in the Skin Microbiome and Bacteriophages of Psoriasis: An Extended Analysis of Published Data
May 2024
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The Nasal Mucosa of the CFTR-KO Mouse Mimics Baseline Cystic Fibrosis Immune Dysregulation and Microbiome Dysbiosis
February 2024
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Changes in HLA-B27 Transgenic Rat Fecal Microbiota Following Tofacitinib Treatment and Ileocecal Resection Surgery: Implications for Crohn’s Disease Management
February 2024
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Prescription opioids induced microbial dysbiosis worsens severity of chronic pancreatitis and drives pain hypersensitivity
February 2024
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Supplemented Infant Formula and Human Breast Milk Show Similar Patterns in Modulating Infant Microbiota Composition and Function In Vitro
February 2024
inter-sample differences in gut microbiome
Alpha-synuclein overexpression can drive microbiome dysbiosis in mice
February 2024
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The Impact of In-Water vs. In-Feed Chlortetracycline and Tiamulin Administration in Piglets on the Fecal Prevalence and Antimicrobial Resistance of Salmonella
January 2024
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Metagenomic Assessment of the Bacterial Breastfeeding Microbiome in Mature Milk Across Lactation
November 2023
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Sediment microbiome diversity and functional profiles of unprotected arid-tropical natural wetlands in South Africa revealed by shotgun metagenomics data
October 2023
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Sensitization of Gram-Negative Bacteria to Aminoglycosides with 2-Aminoimidazole Adjuvants
October 2023
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Identifying Biodegradation Pathways of Cetrimonium Bromide (CTAB) Using Metagenome, Metatranscriptome, and Metabolome Tri-omics Integration
September 2023
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Correlating the Gut Microbiota and Circulating Hormones with Acne Lesion Counts and Skin Biophysical Features
August 2023
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A gut-restricted glutamate carboxypeptidase II inhibitor reduces monocytic inflammation and improves preclinical colitis
August 2023
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Efficacy and dose response of Lactiplantibacillus plantarum in diarrhea-predominant irritable bowel syndrome Martoni CJ, Srivastava S, Damholt A, Leyer GJ. Efficacy and dose response of Lactiplantibacillus plantarum in diarrhea-predominant irritable bowel syndrome. World J Gastroenterol 2023; 29(28): 4451-4465 [DOI: 10.3748/wjg.v29.i28.4451]
July 2023
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Effect of in-water administration of quorum system inhibitors in broilers’ productive performance and intestinal microbiome in a mild necrotic enteritis challenge
July 2023
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Whole-genome sequencing and annotation of selected Enterobacteriaceae derived from commercial cucumber fermentation
July 2023
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Dynamic effects of probiotic formula ecologic®825 on human small intestinal ileostoma microbiota: a network theory approach
July 2023
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Shotgun metagenomic sequencing on skin microbiome indicates dysbiosis exists prior to the onset of atopic dermatitis
July 2023
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Interactions between Bifidobacterium and Bacteroides and human milk oligosaccharides and their associations with infant cognition
June 2023
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Skin maturation from birth to 10 years of age: Structure, function, composition and microbiome
June 2023
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Significant Microbial Changes Are Evident in the Reproductive Tract of Pregnant Rhesus Monkeys at Mid-Gestation but Their Gut Microbiome Does Not Shift until Late Gestation
June 2023
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Low-dose glyphosate exposure alters gut microbiota composition and modulates gut homeostasis
June 2023
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Wastewater monitoring for detection of public health markers during the COVID-19 pandemic: Near-source monitoring of schools in England over an academic year
May 2023
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Shared and Distinct Gut Microbial Profiles in Saudi Women with Metabolically Healthy and Unhealthy Obesity
May 2023
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Th17 cells sense microbiome to promote depressive-like behaviors
April 2023
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Whole-Genome Sequencing and Annotation of Pediococcus ethanolidurans and Pediococcus pentosaceus Isolates from Commercial Cucumber Fermentation
April 2023
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Mutant and curli-producing E. coli enhance the disease phenotype in a hSOD1-G93A mouse model of ALS
April 2023
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AN ALGEBRAIC DISCUSSION OF BISEXUAL POPULATIONS WITH WOLBACHIA INFECTION II: EVOLUTION ALGEBRA APPROACH
April 2023
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Fermentation of the Brown Seaweed Alaria esculenta by a Lactic Acid Bacteria Consortium able to Utilize Mannitol and Laminari-Oligosaccharides
April 2023
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Pilot characterization of the salivary microbiome in pediatric cancer patients
April 2023
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HMOs Exert Marked Bifidogenic Effects on Children’s Gut Microbiota Ex Vivo, Due to Age-Related Bifidobacterium Species Composition
April 2023
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Metagenomic Shotgun Sequencing Reveals Specific Human Gut Microbiota Associated with Insulin Resistance and Body Fat Distribution in Saudi Women
April 2023
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Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 Synergistically Boost Butyrate Levels upon Tributyrin Administration Ex Vivo
March 2023
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Study design and methods for the pilot study of muscadine grape extract supplement to improve fatigue among older adult cancer survivors (FOCUS) trial
March 2023
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Effect of a Fructose-Rich Diet on Gut Microbiota and Immunomodulation: Potential Factors for Multiple Sclerosis
March 2023
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Dectin-1 signaling on colonic γδ T cells promotes psychosocial stress responses
March 2023
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Ketogenic diet therapy for pediatric epilepsy is associated with alterations in the human gut microbiome that confer seizure resistance in mice
March 2023
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Genome Analysis of Two Pseudomonas syringae pv. aptata Strains with Different Virulence Capacity Isolated from Sugar Beet: Features of Successful Pathogenicity in the Phyllosphere Microbiome
February 2023
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Probiotics supplementation to adult human small intestinal stoma microbiota causes dynamic increase in the community resistance to perturbations and nutrient utilization
January 2023
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Serum Vitamin D Level and Gut Microbiota in Women
January 2023
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Potential reservoirs of antimicrobial resistance in livestock waste and treated wastewater that can be disseminated to agricultural land
Janaury 2023
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Capacity of a Microbial Synbiotic To Rescue the In Vitro Metabolic Activity of the Gut Microbiome following Perturbation with Alcohol or Antibiotics
January 2023
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Fast Track Diagnostic Tools for Clinical Management of Sepsis: Paradigm Shift from Conventional to Advanced Methods
January 2023
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The role of environmental enrichment in the aetiopathogenesis of Staphylococcus aureus facial, periorbital and retroorbital abscesses in mice
Janaury 2023
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Change and stasis of distinct sediment microbiomes across Port Everglades Inlet (PEI) and the adjacent coral reefs
January 2023
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Dietary Polyphenols in Relation to Gut Microbiota Composition in Saudi Arabian Females
December 2022
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Human blood vessel microbiota in healthy adults based on common femoral arteries of brain-dead multi-organ donors
November 2022
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Vitamin B12 Status and Gut Microbiota among Saudi Females with Obesity
November 2022
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Metagenomics of Parkinson's disease implicates the gut microbiome in multiple disease mechanisms
November 2022
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Dynamics of Fecal Antimicrobial Resistance in the Young Dairy Calf
October 2022
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Impact of gut permeability on the breast microbiome using a non-human primate model
Alaa Bawaneh, , Carol A. Shively, Janet Austin Tooze and Katherine Loree Cook October 2022
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Influence of Adiposity on the Gut Microbiota Composition of Arab Women: A Case-Control Study
Esra’a A. Aljazairy, Sara Al-Musharaf, Manal Abudawood, Basmah Almaarik, Syed D. Hussain, Abdullah M. Alnaami, Shaun Sabico, Nasser M. Al-Daghri, Mario Clerici and Ghadeer S. Aljuraiban October 2022
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Assembly of Olivibacter sp. Strain UJ_SKK_5.1 Genome Sequence, Isolated from Metagenomes of Macrotermes bellicosus Guts Collected from Hot, Arid Nigeria
Richard J. Kutshik, Bitrus Yakubu, Enoch B. Joel, Jessica L. Lenka, Aminu Tukur, Ishaya Y. Longdet September 2022
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Dietary Isoflavones Alter Gut Microbiota and Lipopolysaccharide Biosynthesis to Reduce Inflammation
Sudeep Ghimire, Nicole M. Cady, Peter Lehman, Stephanie R. Peterson, Shailesh K. Shahi, Faraz Rashid, Shailendra Giri & Ashutosh K. Mangalam September 2022
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The Role of Multiple Sclerosis Therapies on the Dynamic of Human Gut Microbiota
Vacaras V, Muresanu DF, Buzoianu A, Nistor C, Vesa SC, Paraschiv AC, Botos-Vacaras D, Vacaras C, Vithoulkas G September 2022
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Oral ingestion of the environmental toxicant trichloroethylene in rats induces alterations in the gut microbiome: Relevance to idiopathic Parkinson's disease
September 2022
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Exposure to crop production alters cecal prokaryotic microbiota, inflates virulome and resistome in wild prairie grouse
August 2022
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Draft Genome Sequence of Lysinibacillus sp. Strain BPa_S21, Isolated from Petroleum-Contaminated Soil in Delta State, Nigeria
Grace A. Okenmor, Richard J. Kutshik, Ishaya Y. Longdet July 2022
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Bladder Tissue Microbiome Composition in Patients of Bladder Cancer or Benign Prostatic Hyperplasia and Related Human Beta Defensin Levels
Bassel Mansour, Ádám Monyók, Márió Gajdács, Balázs Stercz, Nóra Makra, Kinga Pénzes, István Vadnay, Dóra Szabó and Eszter Ostorházi July 2022
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Absence of toxin gene transfer from Clostridioides difficile strain 630Δerm to nontoxigenic C. difficile strain NTCD-M3r in filter mating experiments
Susan P. Sambol,Stuart Johnson,Adam Cheknis,Dale N. Gerding June 2022
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Mobile phones are hazardous microbial platforms warranting robust public health and biosecurity protocols
Matthew Olsen, Rania Nassar, Abiola Senok, Susan Moloney, Anna Lohning, Peter Jones, Gary Grant, Mark Morgan, Dinesh Palipana, Simon McKirdy, Rashed Alghafri & Lotti Tajouri June 2022
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Host gut resistome in Gulf War chronic multisymptom illness correlates with persistent inflammation
Dipro Bose, Somdatta Chatterjee, Ethan Older, Ratanesh Seth, Patricia Janulewicz, Punnag Saha, Ayan Mondal, Jeffrey M. Carlson, Alan W. Decho, Kimberly Sullivan, Nancy Klimas, Stephen Lasley, Jie Li & Saurabh Chatterjee June 2022
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Complex and unexpected outcomes of antibiotic therapy against a polymicrobial infection
May 2022
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Oral Microbiota Populations of Adult Dogs Consuming Wet or Dry Foods
Patrícia M Oba, Kelly M Sieja, Stephanie C J Keating, Teodora Hristova, Amy J Somrak, Kelly S Swanson May 2022
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Inulin Supplementation Mitigates Gut Dysbiosis and Brain Impairment Induced by Mild Traumatic Brain Injury during Chronic Phase
Lucille M. Yanckello, Brian Fanelli, Scott McCulloch, Xin Xing, McKenna Sun, Tyler C. Hammond, Rita Colwell, Zezong Gu, Aaron C. Ericsson, Ya-Hsuan Chang, Adam D. Bachstetter, Ai-Ling Lin March 2022
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The Neuro-Endo-Microbio-Ome Study: A Pilot Study of Neurobiological Alterations Pre- Versus Post-Bariatric Surgery
Khushbu Agarwal, PhD, Katherine A. Maki, PhD, Carlotta Vizioli, PhD, Susan Carnell, PhD, Ethan Goodman, PhD, Matthew Hurley, PhD, Civonnia Harris, BSc, Rita Colwell, PhD, Kimberley Steele, MD, PhD, Paule V. Joseph, PhD April 2022
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Genome Sequences for Levilactobacillus brevis Autochthonous to Commercial Cucumber Fermentations
Clinton A. Page, Ruby A. Carter-Ogden, Alice M. Lee, Ilenys M. Pérez-Díaz April 2022
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Gut Microbiome Alterations Associated with Diabetes in Mexican Americans in South Texas
April 2022
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Gut microbiome features associated with liver fibrosis in Hispanics, a population at high risk for fatty liver disease
April 2022
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Antibiotics and fecal transfaunation differentially affect microbiota recovery, associations, and antibiotic resistance in lemur guts
Sally L. Bornbusch, Rachel L. Harris, Nicholas M. Grebe, Kimberly Roche, Kristin Dimac-Stohl & Christine M. Drea October 2021
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Dysbiosis of the gut microbiome impairs mouse skeletal muscle adaptation to exercise
Taylor R. Valentino, Ivan J. Vechetti Jr, C. Brooks Mobley ,Cory M. Dungan ,Lesley Golden, Jensen Goh, John J. McCarthy September 2021
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Metagenomics of Plant Rhizosphere and Endophytic Association: Concepts and Applications
Arpita Ghosh, Ankita Rathore & Balakuntla Jayanth September 21
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Piglet Gut and in-Barn Manure from Farms on a Raised without Antibiotics Program Display Reduced Antimicrobial Resistance but an Increased Prevalence of Pathogens
Samuel M. Chekabab, John R. Lawrence, Alvin C. Alvarado, Bernardo Z. Predicala and Darren R. Korber September 2021
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Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade
Miles C. Andrews, Connie P. M. Duong, Jennifer A. Wargo July 2021
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Human beta defensin levels and vaginal microbiome composition in post-menopausal women diagnosed with lichen sclerosus
Alexandra Brunner, Márta Medvecz, Nóra Makra, Miklós Sárdy, Kinga Komka, Máté Gugolya, Dóra Szabó, Márió Gajdács & Eszter Ostorházi Auig 21
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A pilot metagenomic study reveals that community derived mobile phones are reservoirs of viable pathogenic microbes
Matthew Olsen, Rania Nassar, Abiola Senok, Abdulla Albastaki, John Leggett, Anna Lohning, Mariana Campos, Peter Jones, Simon McKirdy, Lotti Tajouri & Rashed Alghafri July 2021
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Bacteria - derived short chain fatty acids restore sympathoadrenal responsiveness to hypoglycemia after antibiotic-induced gut microbiota depletion
Edmund F. LaGamma Furong Hua Fernando Pena Cruz Philip Bouchevc Bistra B.Nankova July 2021
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Microbiota and Metabolomic Patterns in the Breast Milk of Subjects with Celiac Disease on a Gluten-Free Diet
Katherine L. Olshan , Ali R. Zomorrodi, Meritxell Pujolassos, Jacopo Troisi, Nayeim Khan, Brian Fanelli, Victoria Kenyon, Alessio Fasano andMaureen M. Leonard Jun 21
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Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study
Maureen M. Leonard, Francesco Valitutti, Hiren Karathia, Meritxell Pujolassos, Victoria Kenyon, Brian Fanelli, Jacopo Troisi, Poorani Subramanian, Stephanie Camhi, Angelo Colucci, Gloria Serena, Salvatore Cucchiara, Chiara Maria Trovato, Basilio Malamisura, Ruggiero Francavilla, Luca Elli, Nur A. Hasan, Ali R. Zomorrodi, Rita Colwell, Alessio Fasano, and The CD-GEMM Team. July 2021
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Gut microbiota of frugo-folivorous sifakas across environments.
Greene LK, Blanco MB, Rambeloson E, Graubics K, Fanelli B, Colwell RR, Drea CM. May 2021
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Diversity of Plasmids and Genes Encoding Resistance to Extended-Spectrum β-Lactamase in Escherichia coli from Different Animal Sources.
Ibekwe A, Durso L, Ducey TF, Oladeinde A, Jackson CR, Frye JG, Dungan R, Moorman T, Brooks JP, Obayiuwana A, Karathia H, Fanelli B, Hasan N.
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Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model.
Newman TM, Shively CA, Register TC, Appt SE, Yadav H, Colwell RR, Fanelli B, Dadlani M, Graubics K, Nguyen UT, Ramamoorthy S, Uberseder B, Clear KYJ, Wilson AS, Reeves KD, Chappell MC, Tooze JA, Cook KL. May 2021
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Spinal Cord Injury Changes the Structure and Functional Potential of Gut Bacterial and Viral Communities
Jingjie Du, Ahmed A. Zayed, Kristina A. Kigerl, Kylie Zane, Matthew B. Sullivan sullivan, and Phillip G. Popovich . Mayb2021
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Assessing the effects of common topical exposures on skin bacteria associated with atopic dermatitis
C. R. Castillo, M. E. Alishahedani, P. Gough, P. P. Chaudhary, M. Yadav, J. Matriz, I. A. Myles. May 2021
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A New Strain of Christensenella minuta as a Potential Biotherapy for Obesity and Associated Metabolic Diseases
Wilfrid Mazier,Katy Le Corf, Ccori Martinez, Héloïse Tudela, Déborah Kissi, Camille Kropp, Chrislain Coubard, Marion Soto, Frédéric Elustondo, Georges Rawadi and Sandrine P. Claus. Apr 2021
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Aging-Induced Dysbiosis of Gut Microbiota as a Risk Factor for Increased Listeria monocytogenes Infection.
Alam MS, Gangiredla J, Hasan NA, Barnaba T, Tartera C. Apr 21
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Fungal Dysbiosis in Children with Celiac Disease.
El Mouzan M, Al-Hussaini A, Fanelli B, Assiri A, AlSaleem B, Al Mofarreh M, Al Sarkhy A, Alasmi M. Mar 21
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The genital microbiome and its potential for detecting sexual assault
Mirna Ghemrawi, Andrea Ramírez Torres, George Duncan, Rita Colwell, Manoj Dadlani, Bruce McCord. Mar 21
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Evaluation of a Combined Multilocus Sequence Typing and Whole-Genome Sequencing Two-Step Algorithm for Routine Typing of Clostridioides difficile
Mini Kamboj, Tracy McMillen, Mustafa Syed, Hoi Yan Chow, Krupa Jani, Anoshe Aslam, Jennifer Brite, Brian Fanelli, Nur A Hasan, Manoj Dadlani, Lars Westblade, Ahmet Zehir, Matthew Simon, N Esther Babady. Jan 21
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Water Microbiota from a Commercial Alfalfa Sprout Crop over 4 Days of Growth.
Reed E, Sanderson R, Sanderson B, Ramachandran P, Commichaux S, Brown E, Zheng J, Strain E, Ottesen A. Jan 21
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Vaccine Hyporesponse Induced By Individual Antibiotic Treatment In Mice And Non-Human Primates Is Diminished Upon Recovery Of The Gut Microbiome
Gokul Swaminathan, Michael Citron, Jianying Xiao, James E Norton Jr, Abigail L Reens, Begüm D. Topçuoğlu, Julia M Maritz, Keun-Joong Lee, Daniel C Freed, Teresa M Weber, Cory H White, Mahika Kadam, Erin Spofford, Erin Bryant-Hall, Gino Salituro, Sushma Kommineni, Xue Liang, Olga Danilchanka, Jane A Fontenot, Christopher H Woelk, Dario A Gutierrez, Daria J Hazuda, Geoffrey D Hannigan. Jan 21
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Temporal Resistome and Microbial Community Dynamics in an Intensive Aquaculture Facility with Prophylactic Antimicrobial Treatment.
Patil HJ, Gatica J, Zolti A, Benet-Perelberg A, Naor A, Dror B, Al Ashhab A, Marman S, Hasan NA, Colwell RR, Sher D, Minz D, Cytryn E. Dec 20
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Metagenomic Next-Generation Sequencing of Nasopharyngeal Specimens Collected from Confirmed and Suspect COVID-19 Patients.
Mostafa HH, Fissel JA, Fanelli B, Bergman Y, Gniazdowski V, Dadlani M, Carroll KC, Colwell RR, Simner PJ. Nov 20
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Feasibility and Comparison Study of Fecal Sample Collection Methods in Healthy Volunteers and Solid Organ Transplant Recipients Using 16S rRNA and Metagenomics Approaches
Sunil M Kurian, Skyler Gordon, Bethany Barrick, Manoj N Dadlani, Brian Fanelli, Jenny B Cornell, Steven R Head, Christopher L Marsh, Jamie Case. Oct 20
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Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease.
Leonard MM, Karathia H, Pujolassos M, Troisi J, Valitutti F, Subramanian P, Camhi S, Kenyon V, Colucci A, Serena G, Cucchiara S, Montuori M, Malamisura B, Francavilla R, Elli L, Fanelli B, Colwell R, Hasan N, Zomorrodi AR, Fasano A; CD-GEMM Team. Sep 20
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A New Whole Genome Culture-Independent Diagnostic Test (WG-CIDT) for Rapid Detection of Salmonella in Lettuce.
Ogunremi D, Dupras AA, Naushad S, Gao R, Duceppe MO, Omidi K, Márquez IG, Huang H, Goodridge L, Lévesque RC, Hasan NA, Dadlani M, Dixon B, Magierowski S, Masson L. Apr 20
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A comparative analysis of drinking water employing metagenomics.
Brumfield KD, Hasan NA, Leddy MB, Cotruvo JA, Rashed SM, Colwell RR, Huq A. Apr 20
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Microbial resolution of whole genome shotgun and 16S amplicon metagenomic sequencing using publicly available NEON data.
Brumfield KD, Huq A, Colwell RR, Olds JL, Leddy MB. Feb 20
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Comparison of Three Commercial Tools for Metagenomic Shotgun Sequencing Analysis
Matthew Thoendel, Patricio Jeraldo, Kerryl E Greenwood-Quaintance, Janet Yao, Nicholas Chia, Arlen D Hanssen, Matthew P Abdel, Robin Patel. Feb 20
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Bacterial, Gut Microbiome-Modifying Therapies to Defend against Multidrug Resistant Organisms
Amy Feehan, Julia Garcia-Diaz. Jan 20
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Multiple NDM-5 Expressing Escherichia Coli Isolates From An Immunocompromised Pediatric Host
Flerlage, et al, University of Tennessee Health Science Center, January 2020 Open Forum Infectious Diseases
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Gut DNA Virome Diversity And Its Association With Host Bacteria Regulate Inflammatory Phenotype And Neuronal Immunotoxicity In Experimental Gulf War Illness
Ratanesh, S et al, University of South Carolina, Oct 2019, Viruses
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Metagenomics-Based Evaluation Of Groundwater Microbial Profiles In Response To Treated Wastewater Discharge
Zaouri et al, WDRC October 2019, Elsevier
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Prosthetic Joint Infections Present Diverse And Unique Microbial Communities Using Combined Whole-Genome Shotgun Sequencing And Culturing Methods
Weaver, et al., University of Notre Dame Oct 2019 Journal of Medical Microbiology
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Resistome Metagenomics From Plate To Farm: The Resistome And Microbial Composition During Food Waste Feeding And Composting On A Vermont Poultry Farm
Eckstrom, K and Barlow, J.W., University of Vermont July 2019 bioRxiv Preprint
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Oral Beta-Lactamase Protects The Canine Gut Microbiome From Oral Amoxicillin-Mediated Damage
Connelly, et al., Synthetic Biologics May 2019 Microorganisms
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Drinking Water Microbiome Project: Is It Time?
Hull, N.M. et al, Ohio State University Apr 2019, Trends in Microbiology
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Strain- And Species-Level Variation In The Microbiome Of Diabetic Wounds Is Associated With Clinical Outcomes And Therapeutic Efficacy
Kalan, L. et al, May 2019, Cell Host & Microbe.
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Metagenomic Profiling Of Microbial Pathogens In The Little Bighorn River, Montana
Hamner, S. et al, March 2019 International Journal of Environmental Research and Public Health.
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Microbiota Of The Hickey Run Tributary Of The Anacostia River
Cagle, R. et al, US FDA March 2019 Microbiology Resource Announcements
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Oral Metallo-Beta-Lactamase Protects The Gut Microbiome From Carbapenem-Mediated Damage And Reduces Propagation Of Antibiotic Resistance In Pigs
Connelly et al, Synthetic Biologics February 2019 Frontiers in Microbiology
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Genome Sequence Of Enterococcus Faecalis NVIT04, Isolated From Nasonia Vitripennis
Wang, GH. et al, The Rowland Institute at Harvard University January 2019 American Society for Microbiology Microbiology Resource Announcements
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Metagenome Sequencing-Based Strain-Level And Functional Characterization Of Supragingival Microbiome Associated With Dental Caries In Children
Al-Hebshi, N. et al, Temple School of Dentistry December 2018 Journal of Oral Microbiology
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Evaluation Of The CosmosID Bioinformatics Platform For Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis
Yan, Q. et al, Mayo Clinic November 2018 Journal of Clinical Microbiology
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The Microbial Basis Of Impaired Wound Healing: Differential Roles For Pathogens, “Bystanders”, And Strain-Level Diversification In Clinical Outcomes
Kalan, L. et al, University of Wisconsin-Madison September 2018 BioRxiv preprint
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Current Progress And Future Opportunities In Applications Of Bioinformatics For Biodefense And Pathogen Detection: Report From The Winter Mid-Atlantic Microbiome Meet-Up
Meisel J. et al, Center for Bioinformatics and Computational Biology, University of Maryland November 2018 Microbiome
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Characterization Of The Microbiome At The World’s Largest Potable Water Reuse Facility
Stamps B. et al, Colorado School of Mines October 2018 Frontiers in Microbiology
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High-Resolution Microbiome Profiling With Metagenomics Next-Generation Sequencing And CosmosID
Illumina Application Note, 2018.
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A Metagenomic Approach To Evaluating Surface Water Quality In Haiti
Roy, M. et al, University of Massachusetts Amherst October 2018 International Journal of Environmental Research and Public Health
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Exploring The Microbiome Of Callinectes Sapidus (Maryland Blue Crab)
Ramachandran, P. et al, US FDA May 2018 Microbiology Resource Announcements
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The Invasive Brazilian Pepper Tree (Schinus Terebinthifolius) Is Colonized By A Root Microbiome Enriched With Alphaproteobacteria And Unclassified Spartobacteria
Dawkins, K. et al, Florida Atlantic University May 2018 Frontiers in Microbiology
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Messages From The Second International Conference On Clinical Metagenomics (ICCMg2)
Ruppe, E. et al, Hôpital Bichat April 2018 Microbes and Infection
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Characterization Of The Microbiota Of Oyster Larvae (Crassostrea Virginica) And Tank Water From An Aquaculture System With High And Low Larval Survival Rates
Ramachandran, P. et al, US FDA June 2018 Microbiology Resource Announcements
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Comparison Of Infant Gut And Skin Microbiota, Resistome And Virulome Between Neonatal Intensive Care Unit (NICU) Environments
Hourigan, S. et al, Inova Children’s Hospital June 2018 Frontiers in Microbiology
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Interrogating The Microbiome: Experimental And Computational Considerations In Support Of Study Reproducibility
Poussin, C. et al, Philip Morris Products S.A. June 2018 Drug Discovery Today
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Distinct Consequences Of Amoxicillin And Ertapenem Exposure In The Porcine Gut Microbiome
Connelly, S. et al, Synthetic Biologics April 2018 Anaerobe
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The Microbiomes Of Blowflies And Houseflies As Bacterial Transmission Reservoirs
Junqueira, A. et al, Nanyang Technological University Nov 2017 Scientific Reports
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Application Of Next Generation Sequencing Toward Sensitive Detection Of Enteric Viruses Isolated From Celery Samples As An Example Of Produce
Yang, Z. et al, US FDA Nov 2017 International Journal of Food Microbiology
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Metagenomic Sequencing To Replace Semi-Quantitative Urine Culture For Detection Of Urinary Tract Infections: A Proof Of Concept
Janes, V. et al, Academic Medical Center Aug 2017 BioRxiv Preprint
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Aging-Associated Dysbiosis Increases Susceptibility To Enteric Viral Infection In Drosophila
Sansone, C. et al, University of Pennsylvania June 2017 BioRxiv
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